Public
Sample SnakeMake workflow provenance trace

Copy to Clipboard
document
  prefix foaf <http://xmlns.com/foaf/0.1/>
  prefix bnode <http://openprovenance.org/provtoolbox/bnode/>
  prefix pre_4 <http://snakemake-provenace/CreateIndex/>
  prefix rdfs <http://www.w3.org/2000/01/rdf-schema#>
  prefix pre_0 <http://snakemake-provenace/>
  prefix crypto <http://id.loc.gov/vocabulary/preservation/cryptographicHashFunctions#>
  prefix sym <http://fr.symetric/vocab#>
  prefix pre_10 <http://snakemake-provenace/CountDEXSeq/>
  prefix pre_7 <http://snakemake-provenace/GetFastq/>
  prefix pre_6 <http://snakemake-provenace/PrepareDEXSeqAnnotations/>
  prefix pre_5 <http://snakemake-provenace/PrepareAnnotations/>
  prefix rdf <http://www.w3.org/1999/02/22-rdf-syntax-ns#>
  prefix pre_3 <http://snakemake-provenace/GetGenome/>
  prefix pre_2 <http://snakemake-provenace#>
  prefix pre_1 <http://>
  prefix pre_11 <http://snakemake-provenace/InsertConditions/>
  prefix pre_12 <http://snakemake-provenace/AnalysisDEXSeq/>
  prefix sioc <http://rdfs.org/sioc/ns#>
  prefix dcterms <http://purl.org/dc/terms/>
  prefix pre_9 <http://snakemake-provenace/IndexBam/>
  prefix pre_8 <http://snakemake-provenace/MappingSTAR/>
  
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-8f05bf1f-a456-4de1-99f8-3b774db58cf4, pre_2:MappingSTAR, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-87e61198-e78d-4340-bc84-06cad431f4b8, pre_2:InsertConditions, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-d1693f04-37c6-4582-b00d-39edcb8e38c2, pre_2:GetFastq, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-59b72ed6-6d0c-4039-889d-cf179363ae52, pre_2:GetFastq, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-f1e9f613-8dc1-4487-9420-a7339281bc95, pre_2:AnalysisDEXSeq, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-dc70f09c-b4db-43c5-96eb-14f11c9e2384, pre_2:IndexBam, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-ba37303b-4365-47ce-819d-4267d71c5474, pre_2:InsertConditions, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-13c03687-c8f1-493f-b5a1-52fc7db67474, pre_2:MappingSTAR, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-2e5937f1-e5d6-4289-a9a2-5b7fb600b07d, pre_2:InsertConditions, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-488c0a97-8560-40c9-9c9d-ac20d3052539, pre_2:CountDEXSeq, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-deaefd4e-4e4e-4799-8519-5b8f32112c28, pre_2:MappingSTAR, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-a5d066b7-d55e-4d7f-868b-4b8b0a1e1f24, pre_2:CreateIndex, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-32c843df-a398-4154-ba2d-b8764893c0cc, pre_2:CountDEXSeq, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-6fa2770b-a26d-4260-9b10-3105fe9faac7, pre_2:CountDEXSeq, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-9370ddf6-d907-4621-8dfa-1e9b91bb252d, pre_2:MappingSTAR, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-174abacc-898b-4232-993e-9313dce5fa24, pre_2:GetGenome, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-6e90df98-e5a7-453e-bd1b-538714ed90a6, pre_2:GetFastq, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-50d4862b-88f4-4d70-950b-364a64a0ccab, pre_2:CountDEXSeq, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-1089e577-25cf-42f0-bbcf-7b2f85076c57, pre_2:CountDEXSeq, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-c9fc0c67-60e7-4d70-92bd-2bd19eb8d385, pre_2:MappingSTAR, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-669ff1bb-4b25-4cac-8e09-d4392a45c226, pre_2:PrepareAnnotations, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-dbc9567f-a702-4816-9465-be4cfcbbf8bf, pre_2:InsertConditions, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-2ed68dd6-5237-40ae-a1b2-190f200afb31, pre_2:GetFastq, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-b4aa5765-9710-4474-9e0f-7d4dc22f350c, pre_2:IndexBam, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-d41fe231-b035-489f-9fff-5d3741b7a188, pre_2:GetFastq, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-995a131c-ba5d-4a29-9c0d-0d867f079cbf, pre_2:GetFastq, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-125f5f3e-4667-4f48-846e-a066df719910, pre_2:IndexBam, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-0572858a-636f-42ef-b6cc-fb0d589b3449, pre_2:InsertConditions, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-22bfb953-928b-495d-94dd-ece7f255116d, pre_2:GetFastq, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-6b7c54e5-20aa-4e48-8e37-fa7d86333ffe, pre_2:GetFastq, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-fb3a2e0f-9848-4340-a13e-34ea3a33fde6, pre_2:MappingSTAR, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-c6b130bd-77f3-4b69-b30b-bcadf66a4a33, pre_2:MappingSTAR, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-9dd5aa26-5395-4a16-91e2-d436a879ed74, pre_2:IndexBam, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-1b27cc93-c1f1-4242-b3f7-9c62261094a9, pre_2:PrepareDEXSeqAnnotations, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-7bdd1b4e-51a8-417a-beb6-471142dfa044, pre_2:IndexBam, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-35ecc333-2582-425b-8592-547f006db6fc, pre_2:InsertConditions, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-a99e3f9e-1c2e-4392-a6ab-d1bab348322c, pre_2:IndexBam, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-6e9f618d-38a6-493a-a951-3d6ef2b78413, pre_2:MappingSTAR, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-2efa5550-bc67-4282-bad4-0d45be432b36, pre_2:CountDEXSeq, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-db393e0b-be4c-41f7-bdc4-66d6f0e73cd3, pre_2:CountDEXSeq, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-4c462cfa-8b9b-4c94-ad3a-8bd92a207358, pre_2:targets, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-1011c1f3-40f3-4dc4-bc73-b32585cac5fd, pre_2:InsertConditions, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-68d78ba8-872c-4b58-8f05-5185277e9464, pre_2:IndexBam, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-d35981ca-790f-4474-ab65-2947d49f2200, pre_2:InsertConditions, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-21bc90b3-acb9-4b0f-8abc-d1d099343ee6, pre_2:IndexBam, -)
  wasAssociatedWith(pre_2:http\://snakemake-provenace#activity-0d70822c-8123-43c6-ace4-89e79e9bc3aa, pre_2:CountDEXSeq, -)
  wasDerivedFrom(pre_1:snakemake-provenace/IndexBam/SRR628585.sorted.bam, pre_1:snakemake-provenace/MappingSTAR/SRR628585.bam, -, -, -)
  wasDerivedFrom(pre_4:Genome, pre_3:chr20.fa.gz, -, -, -)
  wasDerivedFrom(pre_12:MAplot.spliced, pre_11:SRR628583.counts, -, -, -)
  wasDerivedFrom(pre_12:MAplot.spliced, pre_11:SRR628582.counts, -, -, -)
  wasDerivedFrom(pre_12:MAplot.spliced, pre_11:SRR628585.counts, -, -, -)
  wasDerivedFrom(pre_12:MAplot.spliced, pre_11:SRR628584.counts, -, -, -)
  wasDerivedFrom(pre_12:MAplot.spliced, pre_11:SRR628587.counts, -, -, -)
  wasDerivedFrom(pre_12:MAplot.spliced, pre_11:SRR628586.counts, -, -, -)
  wasDerivedFrom(pre_12:MAplot.spliced, pre_11:SRR628589.counts, -, -, -)
  wasDerivedFrom(pre_12:MAplot.spliced, pre_11:SRR628588.counts, -, -, -)
  wasDerivedFrom(pre_12:Dispersion.spliced, pre_11:SRR628588.counts, -, -, -)
  wasDerivedFrom(pre_12:Dispersion.spliced, pre_11:SRR628587.counts, -, -, -)
  wasDerivedFrom(pre_12:Dispersion.spliced, pre_6:PrepareDEXSeqAnnotations.gtf, -, -, -)
  wasDerivedFrom(pre_12:Dispersion.spliced, pre_11:SRR628589.counts, -, -, -)
  wasDerivedFrom(pre_6:PrepareDEXSeqAnnotations.gtf, pre_5:PrepareAnnotations.gtf, -, -, -)
  wasDerivedFrom(pre_1:snakemake-provenace/MappingSTAR/SRR628582.bam, pre_7:SRR628582_1.fastq.gz, -, -, -)
  wasDerivedFrom(pre_1:snakemake-provenace/MappingSTAR/SRR628588.bam, pre_7:SRR628588_2.fastq.gz, -, -, -)
  wasDerivedFrom(pre_1:snakemake-provenace/MappingSTAR/SRR628588.bam, pre_4:SAindex, -, -, -)
  wasDerivedFrom(pre_4:chrNameLength.txt, pre_3:chr20.fa.gz, -, -, -)
  wasDerivedFrom(pre_1:snakemake-provenace/MappingSTAR/SRR628588.bam, pre_7:SRR628588_1.fastq.gz, -, -, -)
  wasDerivedFrom(pre_5:PrepareAnnotations.gtf, pre_1:snakemake-provenace/tables_names.txt, -, -, -)
  wasDerivedFrom(pre_4:SAindex, pre_3:chr20.fa.gz, -, -, -)
  wasDerivedFrom(pre_12:MAplot.spliced, pre_6:PrepareDEXSeqAnnotations.gtf, -, -, -)
  wasDerivedFrom(pre_5:PrepareAnnotations.gtf, pre_1:snakemake-provenace/tables.gtf, -, -, -)
  wasDerivedFrom(pre_11:SRR628587.counts, pre_10:SRR628587.counts, -, -, -)
  wasDerivedFrom(pre_11:SRR628589.counts, pre_10:SRR628589.counts, -, -, -)
  wasDerivedFrom(pre_10:SRR628582.counts, pre_6:PrepareDEXSeqAnnotations.gtf, -, -, -)
  wasDerivedFrom(pre_10:SRR628582.counts, pre_1:snakemake-provenace/IndexBam/SRR628582.sorted.bam, -, -, -)
  wasDerivedFrom(pre_1:snakemake-provenace/MappingSTAR/SRR628582.bam, pre_4:SAindex, -, -, -)
  wasDerivedFrom(pre_1:snakemake-provenace/MappingSTAR/SRR628582.bam, pre_7:SRR628582_2.fastq.gz, -, -, -)
  wasDerivedFrom(pre_11:SRR628585.counts, pre_10:SRR628585.counts, -, -, -)
  wasDerivedFrom(pre_11:SRR628583.counts, pre_10:SRR628583.counts, -, -, -)
  wasDerivedFrom(pre_10:SRR628586.counts, pre_6:PrepareDEXSeqAnnotations.gtf, -, -, -)
  wasDerivedFrom(pre_10:SRR628586.counts, pre_1:snakemake-provenace/IndexBam/SRR628586.sorted.bam, -, -, -)
  wasDerivedFrom(pre_12:AnalysisDEXSeq.spliced, pre_11:SRR628589.counts, -, -, -)
  wasDerivedFrom(pre_12:AnalysisDEXSeq.spliced, pre_6:PrepareDEXSeqAnnotations.gtf, -, -, -)
  wasDerivedFrom(pre_1:snakemake-provenace/IndexBam/SRR628584.sorted.bam, pre_1:snakemake-provenace/MappingSTAR/SRR628584.bam, -, -, -)
  wasDerivedFrom(pre_12:AnalysisDEXSeq.spliced, pre_11:SRR628582.counts, -, -, -)
  wasDerivedFrom(pre_12:AnalysisDEXSeq.spliced, pre_11:SRR628583.counts, -, -, -)
  wasDerivedFrom(pre_12:AnalysisDEXSeq.spliced, pre_11:SRR628584.counts, -, -, -)
  wasDerivedFrom(pre_12:AnalysisDEXSeq.spliced, pre_11:SRR628585.counts, -, -, -)
  wasDerivedFrom(pre_12:AnalysisDEXSeq.spliced, pre_11:SRR628586.counts, -, -, -)
  wasDerivedFrom(pre_12:AnalysisDEXSeq.spliced, pre_11:SRR628587.counts, -, -, -)
  wasDerivedFrom(pre_12:AnalysisDEXSeq.spliced, pre_11:SRR628588.counts, -, -, -)
  wasDerivedFrom(pre_12:Exon.spliced, pre_11:SRR628587.counts, -, -, -)
  wasDerivedFrom(pre_12:Exon.spliced, pre_11:SRR628586.counts, -, -, -)
  wasDerivedFrom(pre_12:Exon.spliced, pre_11:SRR628589.counts, -, -, -)
  wasDerivedFrom(pre_12:Exon.spliced, pre_11:SRR628588.counts, -, -, -)
  wasDerivedFrom(pre_12:Exon.spliced, pre_11:SRR628583.counts, -, -, -)
  wasDerivedFrom(pre_12:Exon.spliced, pre_11:SRR628582.counts, -, -, -)
  wasDerivedFrom(pre_12:Exon.spliced, pre_11:SRR628585.counts, -, -, -)
  wasDerivedFrom(pre_12:Exon.spliced, pre_11:SRR628584.counts, -, -, -)
  wasDerivedFrom(pre_1:snakemake-provenace/MappingSTAR/SRR628584.bam, pre_7:SRR628584_1.fastq.gz, -, -, -)
  wasDerivedFrom(pre_12:Exon.spliced, pre_6:PrepareDEXSeqAnnotations.gtf, -, -, -)
endDocument
        
Showing 100 of the 460 records contained in this document. Full document available via download links.
Bundles
This document contains no bundles.
Download as

PROV-N JSON AdjMatrix
Turtle Trig XML

Export graphic

PDF PNG SVG

Validate Visualisations

Assertions (first 100) #
wasDerivedFrom54
wasAssociatedWith46